Influenza A induced cellular signal transduction pathways
Review Article

Influenza A induced cellular signal transduction pathways

Paul Michael1, Danielle Brabant1, Farag Bleiblo1,2, Chilakamarti V. Ramana3, Michael Rutherford4,5, Sandhya Khurana1,5, T.C. Tai1,5, Anand Kumar6, Aseem Kumar1,5

1Department of Chemistry and Biochemistry and the Biomolecular Sciences Program, Laurentian University, Sudbury, P3E 2C6, ON, Canada;2Department of Biology, University of Benghazi, Benghazi, Libya;3Department of Medicine, Yale University, New Haven, CT, 06516, USA;4Department of Pathology, Health Sciences North, Sudbury, P3E 5J1, ON, Canada;5Medical Sciences Division, Northern Ontario School of Medicine, Sudbury, P3E 2C6, ON, Canada;6Section of Critical Care Medicine, University of Manitoba, Winnipeg, R3A 1R9, MB, Canada

Corresponding to: Aseem Kumar, Ph.D. Department of Chemistry and Biochemistry, Biomolecular Sciences Program, Laurentian University, 935 Ramsey Lake Rd., Sudbury, P3E 2C6, ON, Canada. Email: akumar@laurentian.ca.

Abstract

Influenza A is a negative sense single stranded RNA virus that belongs to the Orthomyxoviridae Family. This enveloped virus contains 8 segments of viral RNA which encodes 11 viral proteins. Influenza A infects humans and is the causative agent of the flu. Annually it infects approximately 5% to 15% of the population world wide and results in an estimated 250,000 to 500,000 deaths a year. The nature of influenza A replication results in a high mutation rate which results in the need for seasonal vaccinations. In addition the zoonotic nature of the influenza virus allows for recombination of viral segments from different strains creating new variants that have not been encountered before. This type of mutation is the method by which pandemic strains of the flu arises. Infection with influenza results in a respiratory illness that for most individuals is self limiting. However in susceptible populations which include individuals with pre-existing pulmonary or cardiac conditions, the very young and the elderly fatal complications may arise. The most serious of these is the development of viral pneumonia which may be accompanied by secondary bacterial infections. Progression of pneumonia leads to the development of acute respiratory distress syndrome (ARDS), acute lung injury (ALI) and potentially respiratory failure. This progression is a combined effect of the host immune system response to influenza infection and the viral infection itself. This review will focus on molecular aspects of viral replication in alveolar cells and their response to infection. The response of select innate immune cells and their contribution to viral clearance and lung epithelial damage will also be discussed. Molecular aspects of antiviral response in the cells in particular the protein kinase RNA dependent response, and the oligoadenylate synthetase RNAse L system in relation to influenza infection.

Keywords: Influenza A; viral pneumonia; cellular signal transduction


Submitted Jul 13, 2013. Accepted for publication Jul 25, 2013.

doi: 10.3978/j.issn.2072-1439.2013.07.42


Influenza A transmission

The influenza A virus results in 3 to 5 million severe cases globally each year. In the United States the Centre for Disease Control estimated over a 30 year period from 1976-1977 season to 2006-2007 season there were an average number of deaths of 23,607 per year. Interestingly the range of influenza associated deaths over this period varied from a low of 3,349 to a high of 48,614 deaths. This highlights the variable nature and pathogenicity of different influenza strains (1). The authors of this report also noted that seasons where H3N2 was prominent, the deaths associated with influenza was 2.7 times higher than in seasons where other strains were prominent. The variability of different strains also plays a role not only in the pathogenicity of influenza but also in its ability to be transmitted from person to person (1). The influenza A virus is responsible for seasonal epidemics and infrequently global pandemics of the flu as was the case with pandemic H1N1 in 2009. Seasonal outbreaks of the flu are a result of continual mutation of this virus with regards to the proteins recognized by the immune system while pandemic strains result from antigenic shifts which completely change the viral proteins the immune system responds to. H1N1 is estimated to be responsible for approximately between 151,700 and 575,400 deaths globally (2). Although the risk factors for development of severe complication from the flu were similar between seasonal and H1N1 infections for individuals with chronic lung diseases, pre-existing cardiac disease and pregnancy they differed in that obesity and people of younger ages cohorts (younger than 65) developed greater complications with H1N1 then those with seasonal strains (3).

The influenza virus is transmitted by three main modes which are (I) direct contact with an infected fomite (II) inhalation of droplets and (III) small particle aerosols. Infected droplets are spread primarily through coughing while aerosols are created during sneezing, speaking or breathing (4). Infected aerosols with particle sizes below 5 µm have been shown to remain aerosolized for 1 hour (5). To spread from one person to the next the influenza virus must remain viable while in the aerosol or on inanimate objects (6). Viability of influenza outside of the body has been studied and factors affecting the viability of this virus have been identified. Relative humidity is one factor studied. The highest viability was associated with humidity levels close to 100% which mimics the levels within the respiratory system (7). Infectious aerosols released in the air where the relative humidity ranged from 50% to 84% displayed a steady decrease in viability. When the humidity level dropped below 50% viability of the influenza virus increased (7). The variation of viability was associated with aerosol dehydration caused by relative humidity levels which increased the salt concentration to a threshold range where the protein content of respiratory aerosols protected the virus from further decline in viability (8). The changes in humidity are also associated with the different seasonal activities of influenza over different regions of the globe. Temperate climate regions generally experience high influenza activity during the times of lowest humidity and coldest temperatures while tropical regions experience influenza peaks during their rainy season where the humidity levels are close to 100%. In both regions the tendency of people to congregate indoors also corresponds to this timing (9).

Infection with influenza A virus results in developing the flu. The symptoms of a typical uncomplicated influenza infection are fever, chills, rhinorrhea, nasal congestion, sinus pain, sore throat, cough, headache, anorexia and myalgia (10). The influenza virus generally does not directly cause these symptoms but triggers an immune response that causes their development (11). Macrophages continually monitor the epithelium of the airways. In the presence of the influenza virus macrophages become activated and trigger the acute phase response. Release of chemokines from activated immune cells further recruits more immune cells to the infected tissue resulting in inflammation that triggers systemic symptoms associated with the flu (10). Fever is the most common symptom of the flu and is caused by the response to the release of cytokines including TNFα, IL6 and IL1 (11). These cytokines whether they are produced locally in the lung or systemically produce the systemic effect of fever. These cytokines cross the blood brain barrier reaching the central nervous system. There they interact with the vagus nerve and signal to the temperature control area of the hypothalamus. This initiates signaling pathways that results in the hypothalamus releasing mediators that cause reflex shivering, peripheral blood vessel constriction that results in the sensation of chills. The sensation of sore throat is attributed to the production of bradykinins and prostaglandins in the airways (10).


Influenza A viral structure

The influenza A virus is a negative sense segmented RNA virus that contains a lipid envelope (Figure 1). The core of the virus particle contains 8 segments of viral RNA that are coated by a viral protein nucleoprotein (NP) (12,13). The protein coated segments are also bound to the three protein subunits polymerase basic 1, polymerase basic 2 and polymerase acidic (PB1, PB2, PA) that comprise the viral RNA dependent RNA polymerase which is responsible for both transcription and replication of the viral genome (14). Together these are the components of the viral ribonucleoproteins (vRNP) which are surrounded by a protein layer made from the viral protein matrix protein 1 (M1) (15). This protein shell is covered by the envelope which is a lipid bilayer derived from the host cell membrane. The envelope contains three viral proteins hemagglutinin (HA), neuraminidase (NA) and matrix protein 2 (M2). The lipids of the envelope are enriched with sphingolipids and cholesterol forming rafts (16). These raft domains associate with the embedded envelope proteins HA, NA and M2. The stability of the virus particle is primarily governed by the lipids of the membrane. The envelope proteins HA and NA have a low mobility with in the envelope and reinforce the virus structure through there association with the underlying M1 protein. M1 links the vRNPs to the envelope glycoproteins contributing to an overall stabilizing effect of the virus structure (17).

Figure 1. Influenza A viral structure. Spike proteins Hemagglutinin (HA), Neuraminidase (NA) and proton channel protein Matrix 2 (M2) span the viral envelope and interact with matrix protein 1 (M1). In the core of the viral particle reside the eight negative sense single stranded viral RNA segments bound with nucleoprotein and the three RNA dependent RNA polymerase subunits Polymerase Basic 1 (PB1), Polymerase Basic 2 (BP2) and Polymerase acidic (PA) forming the viral ribonucleoprotein complex (vRNP).

The virus gains access to the body through the nose, mouth or eyes. Influenza A virus initiates an infection when it comes in contact with the mucosal surfaces of the respiratory tract (Figure 2). Influenza A must come in direct contact with the epithelial cells of the respiratory tract to initiate an infection. Here the virus encounters its first barrier, the layer of mucus that covers and protects the epithelial cells of the respiratory tract. The envelope glycoprotein NA cleaves sialic acid from mucin that lines the epithelial cells. The virus attaches to the exposed cells by the second envelope glycoprotein HA. The HA protein forms a homotrimer in the envelope. The monomer of HA is composed of two polypeptides termed Ha1 and Ha2. Ha1 possess the receptor binding domain while Ha2 contains the membrane fusion peptide (18). This protein attaches to sialic acid linked glycoproteins on the surface of epithelial cells. The type of sialic acid linkage to the glycoprotein determines the tropism of the different types of influenza A viruses towards different hosts (19). Human influenza A viruses contains a HA which has a binding preference for an α-2,6 linked sialic acid to galactose where as the avian origin influenza HA has a binding preference for an α-2,3 linked sialic acid to galactose. The distribution of these glycosidic residues within a species also determines the tissue tropism of influenza. The human respiratory tract contains predominantly α-2,6 linkages expressed on the surface of the epithelium. HA also is a major determinant for tissue tropism of influenza (4). HA must be cleaved in order for it to be functional. Proteases found ubiquitously expressed in the lungs are able to cleave HA in to a functional viral protein. Strains of influenza possessing HA that can be cleaved by other classes of proteases are able to disseminate, infecting a larger range of tissues and tend to be more pathogenic (19). In addition to sialic acid binding recent studies have identified alternative modes of influenza A entry into cells that are dependent on c type lectins and independent of sialic acid binding (20). Other requirements for influenza A viral attachment are also being elucidated. Fibronectin an extracellular matrix protein has been identified as a requirement for certain strains of H1 and H3 influenza viruses. Binding of the virus to the cell surface induces uptake through endocytosis. This uptake has been shown to utilize clatherin dependent and caveolin dependent mechanisms (21). Once the virus is endocytosed it remains in the maturing endosome. Influenza escapes the endosome in a pH dependent manner (22). As the endosome matures it acidifies which activates the M2 envelope protein. The M2 protein is a tetramer integral protein that forms a proton selective ion channel. This protein contains three major domains, a short ectodomain, a transmembrane domain that forms the ion channel and a long cytoplasmic domain (23). Activation of M2 allows protons to enter the viral particle. At a critical pH the M1 protein that stabilizes and mediates attachment of the vRNP to the envelope proteins dissociates and undergoes a morphological change freeing the vRNP from the envelope. In addition the Ha2 peptide of the HA protein activates allowing for the fusion between the membrane of the endosome and the viral envelope. This fusion allows for the cytosolic release of the vRNP from the endosome (24). Once inside the cytoplasm the vRNP must enter the nucleus for transcription of viral genes and replication of the viral genome (25). Entry of the infecting vRNP is mediated by NP which possesses a nuclear localization sequence that binds with karyopherin which is an endogenous heterodimer of karyopherin α1 with karyopherin β or karyopherin α2 and karyopherin β. Once bound by karyopherin the vRNP is ferried to and docked at the nuclear pore complex. Entry in to the nucleus is Ran 10 and p10 dependent (26). Once in the nucleus transcription of the viral genes occurs. The mechanism of viral transcription and genome replication has been well studied but the regulation and switching from transcription to genome replication remains to be fully elucidated. Progress has been made with regards to identifying viral elements involved in regulating these processes. Umbach et al. have found that influenza A virus produces short RNA nucleotides ranging from 18 to 27 nucleotides in length. These viral leader RNAs were found to originate from each of the 8 segments 5' ends (27). Perez et al. found that these virally encoded RNAs acted as enhancers for viral replication but they did not function as a primer for replication. These short RNAs were retained in the nucleus throughout the infection and it is postulated that they act to not only stabilize viral RNA genome replication but to also play a role in maintaining the proper stoichiometry of each viral segment (28). Viral proteins also have been shown to regulate viral transcription and genome replication. Widjaja et al. produced a model whereby transcription of viral genes is accomplished by the associated RNA dependent RNA polymerase. Production and nuclear accumulation of new polymerase allows for complementary RNA to be made. This serves as a template for viral genome replication which is stabilized by both the newly synthesized polymerase and NP (29). They also identified elements of the 3' and 5' UTR of the viral segments involved in competition for viral proteins required for replication and also demonstrated that shorter viral segments can out compete larger segments for viral proteins (29). The viral genomic RNA is associated with viral NP and the three polymerase subunits before being exported out of the nucleus. This requires the re-import of translated NP and the polymerase subunits which posses multiple elements that allow for shuttling between the nucleus and cytoplasm (30). Together these proteins form the vRNP. The vRNP forms a complex in the nucleus between the M1 protein and the nuclear export protein (NEP) formerly known as NS2 (31). Both M1 and NEP have been shown to be required for export of the vRNP out of the nucleus into the cytoplasm which is chromosome region maintenance I (CRM1) dependent (31). The vRNPs accumulate at the microtubule organizing centre upon exiting the nucleus. In addition to these viral proteins, a host cell protein Y-box binding protein (YB-1) has been identified as associating with this complex in the nucleus. This protein is believed to act as an adaptor for the vRNP allowing it to associate with microtubules and to target it to the rab11a recycling endosome which delivers the vRNP to the site of virus assembly (32).

Figure 2. Influenza A viral replication. Influenza A attaches to its target cell through binding of its hemagglutinin protein to sialic acid linked galactose residues. Viral attachment to its receptor induces endocytosis of the virus. During endosomal maturation the luminal pH drops triggering the opening of the matrix 2 proton channel and fusion of HA to the endosomal membrane. This allows for the cytoplasmic release of the viral ribonucleoproteins which are imported into the nucleus. The polymerase subunits on each vRNP initiate production of viral mRNA to produce viral proteins. vRNP also act as template for the formation of cRNA from which genomic copies of influenza genome are synthesized. Viral proteins PB1, PB2, PA, NP and NEP are imported back into the nucleus where they complex with viral genomic RNA to form new vRNP which are exported out of the nucleus and transported to the cellular membrane at the point where the viral transmembrane proteins HA, NA and M2 have been inserted in cholesterol rich lipid rafts. These proteins initiate deformation of the cell membrane starting the budding process. Viral assembly occurs as the 8 vRNPs are incorporated into the budding virion. Release of the complete virus involves cleavage of the sialic acid residues by NA.

Release of the virus from the cells requires assembly of the viral proteins and all 8 vRNP segments into the viral particle. This assembly occurs at the cell’s plasma membrane. The viral proteins HA, NA and M2 are transmembrane proteins that are inserted into the host’s plasma membrane (33). HA and NA are localized to lipid rafts rich in cholesterol and sphingolipids (34). The M1 protein forms associations with the cytoplasmic portions of these transmembrane proteins. It has been demonstrated that viral assembly is selective for each of the 8 vRNPs and virions have one copy of each segment in them (13). Initiation of the budding process involves the HA protein which appears to be necessary for efficient budding but is not absolutely required. It has been shown that HA assists in creating membrane curvature to start the bud but requires the recruitment of other viral proteins for the budding process to complete. The M2 protein plays a role in the scission of the bud from the cell. It has been shown that M2 accumulates in the neck of the bud where scission occurs. Scission of the bud occurs independently of the host endosomal sorting complex required for transport (ESCRT) (35). Final release of the virus particles requires the enzymatic action of NA which cleaves the sialic acid moiety from the budding virus freeing it from the cell.


Viral pneumonia

One of the most serious complications of influenza A infections is the development of pneumonia. Viral induced pneumonia is a result of a combination of extensive viral replication in the lung, particularly the lower regions and the host immune response to the virus (36). The general progression to viral pneumonia development starts with viral replication in the lung epithelial cells and alveolar epithelium. Detection of viral infection in the epithelial cells induces the production and release of pro-inflammatory cytokines and chemokines (37). The host response to the release of these inflammatory mediators is the recruitment and activation of leukocytes from the circulatory system into the lung. In combination with resident alveolar macrophages the infiltration of mononuclear cells can lead to the overproduction of pro-inflammatory cytokines (38). Cell damage results from both the replicating virus which induces both necrosis and apoptosis in lung epithelial cells and macrophages and the products from activated leukocytes including reactive oxygen species (39). When the cell damage becomes extensive this leads to alveolar flooding where protein rich fluid accumulates in the airspace due to impaired fluid uptake from the alveolar epithelium (40). This edema is further exacerbated by an increased permeability of the lung capillaries in response to the infiltrating leukocytes. Damage to the blood air barrier results in decreased gas exchange which results in systemic hypoxia. Autopsy examination of lung tissue from influenza induced pneumonia shows signs of edema, hemorrhage, diffuse alveolar damage and the production of hyaline membrane (3). Acute respiratory distress syndrome (ARDS) leading to respiratory failure is the most common lethal development of influenza induced pneumonia. This syndrome is divided into three phases, the exudative, inflammatory and fibroproliferative phase (41). Damage to sufficient numbers of type II pneumocytes from influenza infection results in a decrease of surfactant production in the lung. Lung surfactant has been shown to have immunomodulating effects on immune cells (42). It has been demonstrated that during ARDS decreased lung surfactant results in increased PI3 kinase activity in immune cells (43). On lung epithelial cells and alveolar macrophages the decreased surfactant production results in increased AKT activation. For neutrophil dependent damage to the lung AKT activation has been shown to be involved (43). The ensuing alveolar flooding is a result of the impaired fluid removal across the lung epithelium due to impaired sodium transport across alveolar epithelial cells (41). In addition the increased cytokine and chemokine production of the alveolar epithelium increases the permeability of the lung endothelium allowing for increased fluid to enter the alveolar space (44). A further complicating factor with influenza induced pneumonia is the development of a secondary bacterial infection in the lungs (45). Up to half of pandemic influenza induced pneumonia was associated with a secondary bacterial infection (46). There is also an association with the type of bacteria found coinfecting with influenza A. Most commonly associated bacterial species which have been found to cause secondary infections to influenza are Streptococcus pneumoniae, Haemophilus influenza and Staphylococcus aureus (47). For these species of bacteria there is an apparent synergism with regards to virulence and pathogenicity. Coinfection with influenza or preinfection with influenza virus results in changes to the functioning of immune cells particularly neutrophils and alveolar macrophages (48). There is also an observed increase in bacterial adherence to the lung epithelium and a concurrent immunosuppression attributed to influenza infection (49). It has been observed in mice that influenza infection results in higher cytokine production of TNFα, IL-1β, IL-6, MIP1α and KC relative to a sole bacterial infection (50). Although influenza A infections predisposes the host to secondary bacterial pneumonia, a recent study has demonstrated that a previous infection with influenza affords some protection against subsequent bacterial pneumonia infection with a different influenza type. This protection was attributed to non-neutralizing antibody production from the initial infection against conserved internal viral protein NP (50).


Influenza A induced pro-inflammatory cellular signalling

Dendritic cells and macrophages, which reside in close proximity to the lung epithelium produce a significant amount of TNF-α and type I IFN in response to influenza virus infection (51). These cytokines activate intracellular signal transduction pathways in the lung epithelial cells. The highly pathogenic 1,918 Influenza virus induced gene expression profiles in mouse and non-human primate lungs which consisted of suppression of type 1 interferon antiviral response and enhanced expression of TNF-α, IFN-γ and IL-6 pro-inflammatory response. There is a dramatic increase in chemokines and inflammatory influx consisting of neutrophils, macrophages and T lymphocytes resulting in enhanced lung injury by a recombinant virus containing 1918 influenza genes HA and NA (52,53). Interferons activate intracellular Jak-Stat pathway as well as alternative signal transduction pathways in parallel (54,55), TNF-α activates a variety of protein kinases including c-Jun N-terminal kinase (JNK), extracellular-signal regulated kinases (ERK1/2), p38 and I-kappa B kinases (IKK). TNF-α activates nuclear factor kappaB (NF-κB) by means of a kinase relay module, involving the IκB kinase (IKK) α, β, γ signalosome (56). In addition to NF-κB, TNF-α also activates additional transcription factors such as AP1 (Fos-Jun) via JNK and activation transcription factor-2 (ATF-2) via JNK, ERK and p38 MAP kinase pathways (57-59). Involvement of ERK, JNK, p38 MAP kinases and activation of transcription factors AP1, NF-κB and ATF-2 has been described in response to influenza virus infection (60-64). Thus, multiple MAP kinase pathways are activated by cytokines as well as virus replication. Influenza virus propagation was impaired by inhibition of Raf/Mek/ERK pathway (60). Furthermore, lung-specific expression of active Raf kinase resulted in increased mortality of influenza virus infected mice (61). Targeting of NF-κB pathway for antiviral therapy in influenza infection has been shown to reduce viral titers and cytokine expression (65). Further understanding of intracellular signal transduction pathways may lead to the development of specific inhibitors of influenza viral replication as well as inflammatory host response that are involved in lung injury.


Intracellular detection of influenza A virus

Cells of the lung epithelium have evolved receptors to detect the presence of viral nucleic acid and initiate a signaling cascade to induce an antiviral pro-inflammatory state (Figure 3). These receptors belong to a family of pattern recognition receptors each of which have a class of molecular structures which binds and activates them (66). Influenza A virus has been demonstrated to activate toll-like receptors (TLRs), NLRP3 inflammasome which belongs to the NOD-like receptors, RIG-I like receptors (RLR), PKR and 2'-5'-oligoadenylate synthetase (OAS) (67). Activation of these receptors is the primary signal for production of pro-inflammatory cytokines and chemokines which are released to recruit and activate leukocytes from the circulation to the site of influenza infection (68,69). The RLRs includes three members, retinoic acid inducible gene one (RIG-I), melanoma differentiation associated gene 5 (MDA5) and laboratory of general physiology 2 (LGP2). For cytosolic detection of influenza RIG-I is the primary receptor involved (70). The vRNP and replicative intermediates contain 5’triphosphates and double stranded RNA which are the unique viral molecular patterns that this receptor binds to distinguishing foreign viral RNA from self RNA (71). Activation of RIG-I results in a cascade of signaling events that pivots around the association with the mitochondrial outer membrane embedded protein IPS-1 (70). Subsequently the downstream signaling leads to the activation of transcription factors NFκB and interferon regulatory factors (IRF) 3 and 7. NFκB activation is responsible for the induction of transcription for pro-inflammatory cytokines while IRF3 and 7 induce the transcription of interferon beta gene which leads to the induction of antiviral genes to create an antiviral state (72,73). Similar to RIG-I signaling activation of TLR3 which is a receptor that resides in the endosomal membrane results in the activation of NFκB and the production of pro-inflammatory cytokines (74). TLR3 binds double stranded RNA. Unlike RIG-I in pulmonary epithelial cells this receptor does not contribute significantly to the production of interferon however its signaling significantly induces a pro-inflammatory state (75). In a mouse model of influenza induced pneumonia tlr3 negative mice were found to have a protective effect with reduced mortality compared to wild type mice with increased survival being attributed to a decreased production of pro-inflammatory cytokines (74). PKR is a 68 kDa latent protein expressed by most cells. It is induced by interferons and is activated by the binding of double stranded RNA or double stranded structures within ssRNA (76). PKR possess two double stranded RNA binding domains which binds its RNA ligand. Binding of RNA induces a conformational change that allows for monomeric PKR to form dimers which allows for autophosphorylation and activation of its kinase domain (77). Once activated PKR will phosphorylate its substrate eIF2α initiating a stress response in the cell (78). This stress response is a rapid reversible inhibition of protein translation. This reduction in translation leads to a reduced translation of all mRNA. The accumulation of mRNA with in the cytoplasm triggers the recruitment of three proteins; the cytotoxic granule associated RNA binding protein (TIA-1), TIA-1 cytotoxic granule associated RNA binding protein like 1 (TIAR) and GapSH3 domain binding protein (G3BP) (79). As these proteins bind the mRNA they trigger aggregation of these complexes together forming stress granules. PKR triggered inhibition of translation leads to the formation of these antiviral stress granules. Viral induced stress granules require PKR activation. Influenza induced stress granules recruit PKR, RIG-I, and oligoadenylate synthetase (OAS) (80). This platform provides an efficient mechanism for interferon induction in response to viral infection. It has also been shown that vRNA colocalizes with these granules which activates RIG-I. Once activated the antiviral stress granule is recruited to the mitochondria to associate with IPS-1. The viral NS1 protein has been shown to antagonize interferon induction at many levels. This viral protein inhibits activation of PKR, OAS, and RIG-I (81). Through inhibition of PKR activation influenza A virus prevents antiviral stress granule formation and production of interferons while the proinflammatory arm of signaling remains intact. The OAS/RNAse L system is part of the innate immune response. OAS is a pattern recognition receptor that is activated by viral double stranded RNA (82,83). Activation of OAS leads to the production of a unique molecule 2',5' oligoadenylate. This molecule specifically activates RNAse L (84). Typically OAS produces trimers and tetramers of 2',5'-oligoadenlyate. Activation of RNase L requires the formation of dimers in response to binding of 2',5'-oligoadenlyate. The active dimer cleaves single stranded RNA at the dinucleotide motif of uracil adenosine or uracil uracil (85). The resulting cleavage product possesses a 3' phosphate which acts as a substrate for RIG-I thus amplifying the signaling to interferon production (67,86). In addition the degradation of viral RNA coupled with the inhibition of translation is the main mechanism of RNase L antiviral activity. However RNase L is not specific to viral RNA degradation and it degrades host rRNA and mRNA and can lead to apoptosis. The NS1 protein of Influenza A has evolved to inhibit the action of the OAS/RNase L system (81). NS1 has been shown to sequester viral double stranded RNA so that it prevents activation of OAS and as a result its effector protein RNase L (87).

Figure 3. Formation and signaling of Influenza A induced antiviral stress granules. In the presence of viral RNA the intracellular sensor protein kinase RNA dependent (PKR) activates and phosphorylates its substrate eukaryotic translation initiation factor 2 alpha (eIF2α) leading to the stalling of protein translation. This results in formation of stress granules containing the stress granule marker proteins TIA-1 cytotoxic granule associated RNA binding protein like 1 (TIAR), GapSH3 domain binding protein (G3BP) and the cytotoxic granule associated RNA binding protein (TIA-1). The antiviral stress granule also contains viral RNA and recruits RIG-I, OAS and RNAse L. Antiviral stress granules associate with the mitochondrial embedded protein IPS-1 which binds with RIG-I leading to the activation of IRF3 which induces the production of interferon β (IFNβ). Activation of 2',5'-oligoadenylate synthetase (OAS) causes the production of 2',5' oligoadenylate (2'5'ATP). This molecule in turn activates RNase L. RNase L degrades both viral and cellular RNA resulting in small single stranded RNA with 5’ triphosphates which acts as substrates to further activate RIG-I. The viral protein nonstructural protein 1 (NS1) inhibits the activation of PKR, RIG-I and OAS.

Conclusions

Since the influenza A virus is comprised of multiple strains that continually mutate, further study is required in the identification of the host factors that are absolutely necessary for viral replication. This area of research is showing progress in identifying new therapeutic targets to act as adjuncts to the seasonal vaccines and these targets may prove to be less susceptible to viral mutations.


Acknowledgements

Disclosure: The authors declare no conflict of interest.


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Cite this article as: Michael P, Brabant D, Bleiblo F, Ramana CV, Rutherford M, Khurana S, Tai TC, Kumar A, Kumar A. Influenza A induced cellular signal transduction pathways. J Thorac Dis 2013;5(S2):S132-S141. doi: 10.3978/j.issn.2072-1439.2013.07.42.

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