Outcomes and prognostic contributors in patients with KRAS mutated non-small cell pulmonary adenocarcinomas: a single institution experience
Lung cancer is the leading cause of cancer diagnosis and cancer-related mortality world-wide. In the United States, an estimated 228,820 patients were diagnosed with lung cancer in the year 2020, and 135,720 individuals died (1). While current trends indicate long-term survival is improving in patients with local and regional disease, the majority of patients are diagnosed when their disease is widely metastatic, and outcomes for these patients remain poor with an estimated 5-year overall survival (OS) of 2.9–10% (2-4). Despite these dismal statistics, survival over the past decade has improved. This likely reflects an evolving understanding of contributing genomic alterations and the emerging era of precision therapy targeting key driver mutations. Targeted therapy has dramatically transformed the therapeutic landscape and outcomes of non-small cell lung cancer (NSCLC), which comprises approximately 84% of lung cancer cases (1). Identifying NSCLC subtypes harboring driver mutations such as EGFR, RET, BRAF, ROS1, ALK, and NTRK have provided an avenue for targeted therapy and have proven useful for disease prognostication purposes.
Although KRAS is the most frequently encountered driver mutation in NSCLC, it has been considered an “undruggable” target, historically attributed to an absence of allosteric binding sites (5,6). This carries important prognostic implications. Patients with KRAS mutations in comparison to patients with targetable driver mutations have a shorter median OS and disease-free survival (DFS) (7). Recently, a phase I study assessing the KRAS p.G12C inhibitory molecule Sotorasib (AMG 510) in patients with heavily pretreated NSCLC found an improved progression free survival (PFS) of 6.3 months, raising hope for a new line of therapy (8). With new treatment modalities on the horizon, identification and categorization of prognostic factors in the “real-world” clinical setting as well as the clinical trial population to allow for subgroup treatment comparisons is paramount in gaining a better understanding of patient outcomes. This study reports on outcomes and prognostic factors in patients with KRAS mutated adenocarcinoma in a standard of care clinical setting in Texas. The following article is reported in accordance with the STROBE reporting checklist (available at http://dx.doi.org/10.21037/jtd-21-432).
This study was conducted in accordance with the Declaration of Helsinki (as revised in 2013), was approved by the Houston Methodist institutional review board (IRB) at the study institution (IRB: PRO00017660:1), and individual consent for this analysis was waived.
This was a retrospective, observational study across 7 hospitals encompassing a single hospital network in Texas. Within this network, a reflex next-generation sequencing (NGS) panel has been implemented since 2017 on all newly diagnosed lung cancers, regardless of pathologic stage at time of diagnosis (9). A data review using the laboratory information system SoftPathDx (SCC) was used to query all cases of lung adenocarcinoma pathologically diagnosed between January 1, 2017 to January 1, 2019. Cases with the search terms “lung”, “adenocarcinoma”, and “MOLECULAR DIAGNOSTICS” in the interpretation or results free-text fields were included. Cases in which cytology did not mention “lung” were excluded. Each patient was then individually cross referenced in the electronic charting system EPIC to corroborate the clinicopathologic diagnosis and to obtain demographic and outcome characteristics. Patients that had a pathologic diagnosis within the hospital network but did not have a KRAS mutation, were diagnosed within the hospital system but treated elsewhere, or were treated within the hospital system but by a private provider that did not use the primary charting system EPIC were excluded from further analysis (Figure 1). All other patients with confirmed pulmonary adenocarcinoma with a KRAS mutation on tissue genomics were included. All patients that met criteria were retrospectively followed until death or last clinical visit up until 12/01/2020. At this institution, KRAS mutational testing was confirmed by one of two methodologies. The first modality was performed either as a single gene test using single base extension followed by mass spectrometry (OncoCarta panel and Sequenom MassARRAY instrument, Agena Biosciences). Alternatively, testing was performed as part of a solid organ tumor hotspot panel by next generation sequencing (Ion AmpliSeq Cancer Hotspot v2 and Ion Proton instrument, Life Technologies) on formalin fixed paraffin embedded (FFPE) tumor tissue by the performing Molecular Diagnostic Pathology Laboratory.
Patient information assessed included age at diagnosis with positive KRAS mutation, sex (male/female), ethnicity, smoking history (never smokers, previous smokers defined as total smoking cessation prior to the diagnosis of NSCLC, and current smokers defined as smoking ≥1 tobacco containing product at the time of diagnosis), time from last cigarette use to diagnosis, pack years smoked, cancer stage (early, including stage I and II, and late, including III and IV) at time of KRAS diagnosis, performance status [measured by Eastern Cooperative Oncology Group (ECOG) from 0–5, with 0– being fully active and 5 being dead], specific KRAS missense mutation site, presence of co-mutations (EGFR, ALK, STK11, TP53, etc.), PD-L1 activity, treatments used (including immunotherapy, chemotherapy, targeted therapy, radiation therapy, surgical lobectomy) and cycles of systemic therapy used. Previous, concurrent, or second cancers, median PFS and OS were also reported. Patients were followed from date of KRAS mutation confirmed to either date of death or last documented note in EPIC.
Descriptive statistics were reported as median with ranges for continuous variables and as frequencies and percentages for categorical variables. Patients were stratified as early stage (stage I and II) and advanced stage (stage III and IV), and KRAS driver mutation (p.G12C and all others). Mortality at 12 months was assessed and compared for prognostic risks including age, sex, type of KRAS mutation (KRAS p.G12C and all other KRAS mutations), pack years smoked, smoking status (current, former, or never smoker), time from last cigarette to diagnosis, and history of, or current diagnosis of another cancer. Comparisons of these prognostic factors were applied to 12-month survival and were compared by using a Fisher’s exact test (significance when the P value is <0.05). A univariate logistic regression model was fitted to the 12-month survival data for age, pack years, and time elapsed since last smoked and odds ratios with 95% confidence interval (CI) were reported, and significance determined by a Wald Chi squared test (significance when the P value is <0.05). Total OS was further assessed for KRAS mutations, smoking history, and sex by Kaplan-Meier methodology. If data was missing for subgroup analysis (i.e., total pack years) but pertinent patient information including KRAS mutation, date of diagnosis, and either date of last follow-up or date of death reported, were still included in the final analysis. If the patient was lost to follow-up, their last progress note was recorded as their last follow-up date.
Between January 1, 2017 to January 1, 2019, a total of 276 cases of NSCLC were identified, of which there were 77 (27.9%) cases of KRAS mutated NSCLC. Of these, 58 (21.0%) patients with KRAS mutated NSCLC were available for clinical assessment and followed retrospectively until 12/1/2020 (Figure 1, Table 1). Figure 2 includes the proportion of KRAS mutations for all pathologically confirmed cases (Figure 2A) and only patients included in the clinical analysis (Figure 2B). From the time of pathologically confirmed diagnosis, all patients in the clinical analysis were followed for a median time of 11.48 (0.5–49.15) months. A summary of treatments is included in Table S1.
There were 32 (55.2%) females and 26 (44.8%) males, with a median age of 72 [52–88] years. The majority (48, 82.7%) of patients were white. Patients had a median of 40 [0.2–120] pack years smoking history, and 32.5 [2–100] and 49.7 (0.2–120) pack years with early and advanced stages, respectively. Of these, 79.3% of patients had ≥15 pack year smoking history (Table 1). There were four (6.7%) patients that had never smoked, two diagnosed at an early stage and two diagnosed at an advanced stage. A total of 13 (22.4%) patients were smoking at the time of diagnosis, 10 of which had late-stage disease. Median time from last cigarette smoked to diagnosis was 22 (0.5–42) and 10 (0.25–50) years for early and advanced stage cancers, respectively. There were 5 (8.6%) patients with missing smoking pack year data, and 4 (6.9%) patients with missing data for time of last cigarette smoked. All other data was available for analysis. In terms of treatment, 21 (36.2%) had surgery, 29 (50.0%) had radiation, 30 (51.7%) had chemotherapy, and 22 (37.9%) received immunotherapy. The most common chemotherapy regimen was carboplatin/pemetrexed, used with or without pembrolizumab in a total of 19 (32.7%) patients. Of the 22 that received immunotherapy, 18 (31.0%) were in combination with a systemic chemotherapy regimen. A total of 6 (10.3%) patients received more than one line of systemic chemotherapy (Tables 1,2, Table S1).
At the time of data cutoff, 29 (50.0%) patients had radiologically confirmed disease progression, (7 with early stage and 22 with late stage), 32 (55.2%) patients died, and 16 (27.6%) patients had either a previously diagnosed, concurrent, or second malignancy (Table S2, Figure S1). The median OS for those that died was 3.48 (0.53–27.93) months. Disease progression was reported in 7 (33.3%) patients with early-stage disease, with a median PFS of 9.1 (1.2–16.1) months, and 22 (59.4%) patients with late-stage disease, with a median PFS of 2.7 (0.6–5.6) months. Ten patients died prior to staging workup to determine radiographic evidence of progression. For the patients that died, 25 (78.1%) deaths were attributed to disease disease progression and 7 (21.2%) due to other causes including cardiac arrest , pneumonia , hemorrhagic pericardial effusion , respiratory failure  and unknown causes  (Table 1, Table S3).
All 10 patients with early stage KRAS p.G12C mutated NSCLC received treatment ranging from chemotherapy/immunotherapy, radiation, surgery, or a combination of the three. Similarly, all 11 patients with other KRAS mutations and early-stage disease received similar treatment modalities. The median ECOG performance status for early-stage disease was 1 (0–1) for p.G12C patients and 0 (0–1) for all other KRAS mutations. When assessing systemic therapy utilization for advanced disease, 8 (50.0%) with KRAS p.G12C and 4 (19.0%) of patients with other KRAS mutations did not receive therapy. ECOG PS for advanced KRAS p.G12C mutated disease and all other KRAS mutations was 2 [1–4] and 1 [1–3], respectively (Table 2, Table S1).
At 12 months, OS for KRAS p.G12C vs. all other KRAS mutations with early-stage disease was 56.3% versus 90.9%, and for advanced stage disease was 25.0% versus 47.6%, respectively. While the HR was 1.54 (95% CI, 0.76, 3.1), this was not statistically significant (P=0.2287). Advanced stage compared to early stage was prognostically significant, with a hazard ratio (HR) of 3.228 [95% CI, 1.32, 7.89, (P=0.0102)]. Assessment of prognostic factors including age, sex, pack years smoked, current smoking status, KRAS mutation (p.G12C vs. all others), and other malignancies found no significant association (Table 3). The estimated probability of survival at 1 year for p.G12C was 38.1% (95% CI, 20.0%, 56.1%) and 62.5% for all other mutations, but this was not significant (P=0.3183) (Figure 3A). The estimated 12-month probability of survival for current smokers was 46.2% (95% CI, 19.2%, 69.4%), for former smokers was 56.0% (95% CI, 39.6%, 69.6%), and for the 4 never smokers was 25.0% (95% CI, 0.9%, 66.5%) (Figure 3B), but this was not significant (P=0.1652). The estimated 12-month probability of survival based of patient sex was 46.2% (95% CI, 19.2%, 69.6%) for females and 25.0% (95% CI, 8.95%, 66.5%) for males, which was not statistically significant (P=0.5487).
A total of 16 (27.6%) had either a previous malignancy/benign tumor or concurrently treated malignancy (Table 2). Three patients had more than two additional malignancies, one patient with breast cancer and meningioma (p.G12C), and one patient with prostate cancer and urothelial bladder cancer (p.G12C), and one patient with cervical and salivary gland tumor (p.G12D) (Table S2). History of malignancy did not significantly impact survival at 12 months (P=0.7696) (Table 3).
KRAS p.G12C was the most frequently diagnosed driver mutation of the KRAS subtypes, occurring in 26 (44.8%) patients in the clinical analysis and in 30 (39.0%) of all pathologically diagnosed KRAS mutated NSCLC (Table 1, Figures 1-4). It occurred in 10 (17.2%) patients with early-stage cancers and 16 (27.6%) patients with advanced stage cancers. A total of 16 (61.5%) patients with KRAS p.G12C mutated NSCLC died at the time of data cutoff, 5 (31.2%) of which had early-stage disease. The median OS for patients with KRAS p.G12C and advanced disease (n=16) was 6.0 (0.93–32.5) months, and for early-stage disease (n=10) was 14.9 months (0.67–49.2) months. The distribution of other mutations is summarized in Figure 1.
Ten patients (17.2%) had at least one commutation reported (Table 1). These included a second KRAS mutation (p.V14) in one patient with a pre-existing p.G12D mutated NSCLC, Met Exon 14 (with p.G12V) (n=1), ARD1A (n=1), STK11 (n=1), TP53 (n=3), SMO (n=1), and GNA11 (n=1), BRAF G469A (n=1), ASXL1 (n=1). Of these commutations, 3 patients (STK11, ARD1A, Met Exon 14), all with advanced disease, died in the 12 months following diagnosis.
Over 3 decades have passed since the discovery of the KRAS oncogenic driver mutation in human lung cancers. Since then, knowledge on genotypic variations, role in disease and treatment prognostication, and patient outcomes continues to evolve (10). With the possibility of targeted therapy for the most common point mutation p.G12C entering the phase 1b/II CodeBreak 101 clinical trial (8, NCT04185883), this retrospective study sought to assess patient characteristics in a standard of care clinical setting involving 1 academic and 6 community hospital settings across Texas. In this patient cohort, KRAS driver mutations in non-small cell pulmonary adenocarcinomas occurred in 27.9% of reported lung cancer cases, with the most frequently detected mutation being KRAS p.G12C. These mutations were mutually exclusive with other driver mutations, like other reports (11,12). Most of the patient population had a smoking history, were older (median age of 72 years), white, with a slightly higher proportion of females (55.2%), findings also consistent with other studies (13-15). This patient population predominately had advanced stage (III and IV) NSCLC at diagnosis, and 48.3% of the patient population died within 12 months following the diagnosis of KRAS mutated NSCLC. In general, patients with the KRAS p.G12C mutation had a poorer baseline ECOG performance status at diagnosis. While the survival differences were not statistically different, patients with early and advanced stage KRAS p.G12C had numerically lower survival at 12-month, which may reflect the poorer performance status at diagnosis impacting the ability of some of these patients to receive systemic therapy. It is also worth noting that the period covered in this study include broad use of immunotherapy, and these poor survival numbers underscore the unmet needs of improving therapies for KRAS mutated lung cancers.
KRAS mutations have demonstrated a poorer OS compared to KRAS wild type NSCLC. Studies have demonstrated that patients with KRAS mutated NSCLC have a shorter median OS regardless of the presence of commutations, shorter 2-year survival, and inferior outcomes when receiving chemotherapy in the metastatic setting (14,16,17). When comparing specific codon mutations and specific genotypic point mutations, results on the impact on survival and PFS are variable. In a study with 677 patients with KRAS mutated advance stage NSCLC, patients with mutations in KRAS codon 13 (n=53) had inferior survival compared to codon 12 (n=624), with a 2-month survival difference (P=0.008), when controlling for age, sex, and smoking status. Another analysis of 450 patients with KRAS mutated, metastatic pulmonary adenocarcinomas found no difference in OS between codon 12 and 13 mutations, although there was a numerically lower 2-year survival with codon 13 (14). While neither of these studies found a point mutation specific impact on survival (12), other studies have found genotypic differences in survival, with point mutations in p.G12C and p.G12V reported to have poorer survival compared to other KRAS-mutant subtypes (18). In a study of 75 Asian patients with advanced NSCLC, KRAS p.G12C portended a better PFS, and even more so when these patients were treated with pemetrexed based chemotherapy as a first line agent (19). In the present study, there was no difference in OS between KRAS p.G12C and all other KRAS mutations. Due to the small sample size of this study, dichotomous comparison between codon 12 and codon 13 was not possible. Furthermore, this study primarily had white patients. Whether survival is different in other ethnic groups is uncertain and should be assessed in additional studies. While there was a numerically lower 12-month survival in KRAS p.G12C mutations with advanced disease compared to all other mutations, these patients (both early and advanced stage) had a poorer performance status at diagnosis.
In this study, nearly 50% of patients died in the 12 months following diagnosis. Many of these patients had advanced disease, with only 5 deaths reported in early-stage disease. There is conflicting data regarding the prognostic implication of KRAS mutations in earlier stage lung cancers. Keohavong reported a nonsignificant, yet notable poorer survival in patients with KRAS mutated stage 1 NSCLC (20). In addition, Nadal et al. found a poorer DFS survival in patients with KRAS mutated lung cancers, with a notable decrease in DFS and OS in the patients with a KRAS p.G12C mutation (21). While Izar et al. also found that patients with KRAS mutated lung cancers had poor DFS and OS, results noted a superior DFS with mutations in codon 12 (22). Comparatively, Yu et al. and Shepherd et al. failed to find a difference in prognostic implications for early-stage disease (12,23). In the present study, 21 patients had early-stage disease at diagnosis. Results did not suggest prognostic impacts on KRAS mutation and stage on survival or progression, but the small sample size precludes a larger analysis.
Determining whether all patients with early stage should be tested for KRAS driver mutations is uncertain. While KRAS mutation testing as a stand-alone assay is not routinely recommended, it is considered reasonable to include as a component in larger assays (24). However, data shows that at an international level, physician ordered molecular testing is still lacking. Despite guidelines recommending routine EGFR mutation testing at diagnosis of advance NSCLC, a 2019 study found that only 80% of oncologists ordered appropriate testing, and of these, 18% of clinicians did not wait for results prior to starting systemic therapy in part due to long turn-around time (24,25). To circumnavigate these delays, the institution involved in the present study has standardized biomarker testing parameters and reflex ordered molecular biomarker testing for lung cancer patients, which includes analysis and reporting of EGFR, KRAS, BRAF, and ERBB2 gene mutations; MET exon 14 skipping; ALK, RET, and ROS1, NTRK1 and NTRK3 gene rearrangements; MET gene amplification; and PD-L1 expression by immunohistochemistry. Implementing this reflex ordered molecular testing strategy in patients with newly diagnosed lung adenocarcinomas has significantly improved turn-around times and allowed for a more uniform and consistent analysis of NSCLC for targetable mutations (9), which may be beneficial in future analyses of the impact of KRAS mutations in early stage, resectable NSCLC. Furthermore, the recent approval of the EGFR inhibitor (T790M, L858R, and exon 19 deletion) osimertinib as an adjuvant treatment for early stage resected adenocarcinoma following results from the phase III ADAURA trial (26) may bring broader next generation sequencing into earlier stages of disease.
Results from this study did not find a significant survival difference between current/former/never smokers harboring the KRAS oncogenic driver mutation. While studies have reported superior OS for never-smokers compared to current or former smokers (27,28), this difference may be due to a lack of homogenous oncogenic mutation subgroups, with KRAS more frequent in smokers, and EGFR and ALK mutations more common in never smokers (12,28). However, when controlling for the specific oncogene, there has been no difference in survival between current/former/never smoking status (12,28). Results in this patient population appear to support this data as well. In addition, the small proportion of never smokers (6.8%), current/former smokers (93.2%), and median pack years smoked is like other reported studies in patients with advanced KRAS mutated NSCLC (12,29). In this study, 93.2% of patients were current/former smokers, and 79.3% of patients that had ever smoked had greater than 15 pack years. Another study in patients with advanced NSCLC had significantly poorer OS when they had smoked greater than 15 pack years compared to less than 15 pack years (0.30, 95% CI, 1.12–1.51, P<0.001) or were never smokers (OR 1.57, 95% CI, 1.36–1.80, P<0.001). This study only included advanced stage NSCLC, and had a large proportion of never smokers, which also included patients who smoked <100 cigarettes (27). The KRAS study population in the present study was heterogenous, including patients of all stages of cancer, and only 4 patients were never smokers. Furthermore, patients that had ever smoked <100 lifetime cigarettes were considered smokers rather than never smokers, and so this combined with the relatively small sample size make comparison of smoking status on survival challenging, and may have contributed to lack of survival difference at 12 months with respect to pack years and smoking status.
There is limited knowledge regarding second malignancies in KRAS mutated NSCLC. In this study, 27.6% of patients had an additional primary cancer, and 50% of these were seen in early-stage NSCLC. Most of these cancers occurred prior to the diagnosis of NSCLC. Studies have found that patients with KRAS mutated early lung cancers have a higher risk of developing second malignancies, ranging from 1.5–15%, and most commonly second primary lung cancers, particularly in patients that smoke (23,30). Shepherd et al. found that patients with KRAS mutated NSCLC had a nearly 3-fold increase in the risk of developing second primary malignancies, whereas patients that received adjuvant chemotherapy had a lower risk of a second primary malignancy (23). Patients in the present study had a range of prior malignancies, including cancers of the genitourinary tract, colorectal cancer, leukemia, lymphoma, and breast cancer, as well as benign tumors that impact patient quality of life (Table S2). While this small patient cohort precludes an in-depth analysis, further observational studies of second KRAS mutated lung cancer in patients with known prior cancers and smoking history are needed. Furthermore, given the potential risk for second primaries in KRAS mutated NSCLC, especially in early-stage patients, it is possible that screening for second primary tumors in this patient population is warranted.
This was a retrospective analysis and as a result has inherent limitations. As a chart review, evaluations are limited to what is provider reported and as such is not always inclusive of variables such as current performance status, smoking history, or date of death. In several cases, the patients were known to have entered hospice care, but a date of death cannot be determined. In addition, 19 patients did not receive treatment at the study institution after primary diagnosis and were not included for additional treatment analysis and outcomes. This, combined with the low baseline sample size impacted the analysis on survival, prognostic variables impacting mortality, and differences in variables when controlling for age and KRAS mutation. As a result, while there was a large numerical difference in mortality for patients with KRAS p.G12C mutations compared to other KRAS mutations in this cohort, no statistical difference in this subgroup or other subgroups was found. Furthermore, the small sample size limited the ability to perform a multivariate analysis controlling for KRAS mutations on all outcomes.
With the evolving era of precision medicine now finding targeted therapy for KRAS p.G12C mutated lung cancers, further studies to determine outcomes in this patient population are needed. This analysis found that patients with KRAS p.G12C mutations had a non-significant poorer OS at 12 months, and that KRAS mutated patients in this cohort had a high proportion of second malignancies. Additional studies to further assess the risk and implication of additional malignancies, as well as prognostic risk factors in standard of care setting are needed.
Reporting Checklist: The authors have completed the STROBE reporting checklist. Available at http://dx.doi.org/10.21037/jtd-21-432
Data Sharing Statement: Available at http://dx.doi.org/10.21037/jtd-21-432
Peer Review File: Available at http://dx.doi.org/10.21037/jtd-21-432
Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/jtd-21-432). Dr. EHB serves as an unpaid editorial board member of Journal of Thoracic Disease from Feb 2019 to Jan 2023. Dr. EHB reports receiving personal fees from Novartis, Pfizer, AstraZeneca, Blueprint medicine and Guardant Health, outside of the submitted work. The other authors have no conflicts of interest to declare.
Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. This study was conducted in accordance with the Declaration of Helsinki (as revised in 2013), was approved by the Houston Methodist institutional review board (IRB) at the study institution (IRB: PRO00017660:1), and individual consent for this retrospective analysis was waived.
Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.
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